CM (`pyinfernal.cm`)
=====================

.. currentmodule:: pyinfernal.cm

.. automodule:: pyinfernal.cm


Profile Covariance Models
-------------------------

.. autosummary::

    CM

.. toctree::
    :caption: Profile Covariance Models
    :maxdepth: 1
    :hidden:

    Profile Covariance Models <cms>


Parsers
-------

.. autosummary::

    CMFile

.. toctree::
    :caption: Parsers
    :maxdepth: 1
    :hidden:

    Parsers <parsers>


Pipelines
---------

.. autosummary::

    Pipeline

.. toctree::
    :caption: Pipelines
    :maxdepth: 1
    :hidden:

    Pipelines <pli>


Results
-------

.. autosummary::

    TopHits
    Hit
    Alignment

.. toctree::
    :caption: Results
    :maxdepth: 1
    :hidden:

    Results <results>



.. Miscellaneous
.. -------------

.. .. autosummary::

..     Transitions

.. .. toctree::
..     :caption: Miscellaneous
..     :maxdepth: 1
..     :hidden:

..     Miscellaneous <misc>