Infernal (pyinfernal.infernal)#

Reimplementation of Infernal binaries with the PyInfernal API.

Note

Functions of this module handle parallelization using threads to run searches in parallel for the different queries. If less queries are given, the number of threads will be reduced to avoid spawning idle threads.

Profile Searches#

cmsearch(queries, sequences, *[, cpus, ...])

Search CM profiles against a sequence database.