Index _ | A | B | C | D | E | F | H | I | M | N | P | Q | R | S | T | W | Z _ __init__() (pyinfernal.cm.CM method) (pyinfernal.cm.CMFile method) (pyinfernal.cm.Pipeline method) (pyinfernal.cm.TopHits method) A accession (pyinfernal.cm.CM attribute) (pyinfernal.cm.Hit attribute) Alignment (class in pyinfernal.cm) alphabet (pyinfernal.cm.Pipeline attribute) B bias (pyinfernal.cm.Hit attribute) C clear() (pyinfernal.cm.Pipeline method) close() (pyinfernal.cm.CMFile method) closed (pyinfernal.cm.CMFile attribute) CM (class in pyinfernal.cm) cm_accession (pyinfernal.cm.Alignment attribute) cm_description (pyinfernal.cm.Alignment attribute) cm_from (pyinfernal.cm.Alignment attribute) cm_name (pyinfernal.cm.Alignment attribute) cm_sequence (pyinfernal.cm.Alignment attribute) cm_to (pyinfernal.cm.Alignment attribute) CMFile (class in pyinfernal.cm) cmsearch() (in module pyinfernal.infernal) command_line (pyinfernal.cm.CM attribute) copy() (pyinfernal.cm.CM method) (pyinfernal.cm.TopHits method) creation_time (pyinfernal.cm.CM attribute) D description (pyinfernal.cm.CM attribute) (pyinfernal.cm.Hit attribute) duplicate (pyinfernal.cm.Hit attribute) E E (pyinfernal.cm.Pipeline attribute) (pyinfernal.cm.TopHits attribute) evalue (pyinfernal.cm.Hit attribute) F F1 (pyinfernal.cm.Pipeline attribute) F2 (pyinfernal.cm.Pipeline attribute) F3 (pyinfernal.cm.Pipeline attribute) F4 (pyinfernal.cm.Pipeline attribute) F5 (pyinfernal.cm.Pipeline attribute) F6 (pyinfernal.cm.Pipeline attribute) filter_hmm (pyinfernal.cm.CM attribute) H Hit (class in pyinfernal.cm) I identity_sequence (pyinfernal.cm.Alignment attribute) incE (pyinfernal.cm.Pipeline attribute) (pyinfernal.cm.TopHits attribute) included (pyinfernal.cm.Hit attribute) (pyinfernal.cm.TopHits attribute) incT (pyinfernal.cm.Pipeline attribute) (pyinfernal.cm.TopHits attribute) M M (pyinfernal.cm.CM attribute) merge() (pyinfernal.cm.TopHits method) module pyinfernal.cm pyinfernal.infernal N N (pyinfernal.cm.CM attribute) name (pyinfernal.cm.CM attribute) (pyinfernal.cm.CMFile attribute) (pyinfernal.cm.Hit attribute) nseq (pyinfernal.cm.CM attribute) nseq_effective (pyinfernal.cm.CM attribute) P Pipeline (class in pyinfernal.cm) posterior_probabilities (pyinfernal.cm.Alignment attribute) pvalue (pyinfernal.cm.Hit attribute) pyinfernal.cm module pyinfernal.infernal module Q query (pyinfernal.cm.TopHits attribute) R randomness (pyinfernal.cm.Pipeline attribute) read() (pyinfernal.cm.CMFile method) reported (pyinfernal.cm.Hit attribute) (pyinfernal.cm.TopHits attribute) S score (pyinfernal.cm.Hit attribute) search_cm() (pyinfernal.cm.Pipeline method) seed (pyinfernal.cm.Pipeline attribute) strand (pyinfernal.cm.Hit attribute) T T (pyinfernal.cm.Pipeline attribute) (pyinfernal.cm.TopHits attribute) target_from (pyinfernal.cm.Alignment attribute) target_name (pyinfernal.cm.Alignment attribute) target_sequence (pyinfernal.cm.Alignment attribute) target_to (pyinfernal.cm.Alignment attribute) TopHits (class in pyinfernal.cm) W write() (pyinfernal.cm.TopHits method) Z Z (pyinfernal.cm.Pipeline attribute) (pyinfernal.cm.TopHits attribute)